BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB023A09LP1|AL427989
(860 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig647 472 e-133
>3x_Contig647
Length = 1778
Score = 472 bits (238), Expect = e-133
Identities = 267/273 (97%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 1 catctgggatccacctcttccactgtcactgaatctcaatcgattgcctccgggtccggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1507 catctgggatccacctcttccactgtcactgaatctcaatcgattgcctccgggtccggt 1566
Query: 61 tctactgcggcagcgcnaaccacaggcacggattctaattccgtggtattatcctctgtt 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1567 tctactgcggcagcagcaaccacaggcacggattctaattccgtggtattatcctctgtt 1626
Query: 121 ccacctgttggctccgtgttgttgagattacctc-atttgaaactcgac-gatgattcaa 178
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 1627 ccacctgttggctccgtgttgttgagattacctctatttgaaactcgacagatgattcaa 1686
Query: 179 actcctttaacaacaagtcctttgtcgagtctttcaacaagcaagttgattcactcaacg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1687 actcctttaacaacaagtcctttgtcgagtctttcaacaagcaagttgattcact-aacg 1745
Query: 239 aaaaagagtttatacttccagaaaatgcagtag 271
|||||||||||||||||||||||||||||||||
Sbjct: 1746 aaaaagagtttatacttccagaaaatgcagtag 1778
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7967
Number of Sequences: 1807
Number of extensions: 7967
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 860
length of database: 10,358,551
effective HSP length: 16
effective length of query: 844
effective length of database: 10,329,639
effective search space: 8718215316
effective search space used: 8718215316
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.7 bits)